{ "cells": [ { "cell_type": "markdown", "metadata": {}, "source": [ "# Draw sequence logos\n", "\n", "Sequence logo's display sequence information. They're extensively applied to transcription factor binding site (TFBS) display. They can also be applied to sequence alignments more generally." ] }, { "cell_type": "markdown", "metadata": {}, "source": [ "## Drawing logo for a TFBS\n", "\n", "We use the TFBS for the TAT box binding protein." ] }, { "cell_type": "code", "execution_count": 1, "metadata": {}, "outputs": [ { "data": { "text/html": [ "
\n", " | T | \n", "C | \n", "A | \n", "G | \n", "\n", "\n", "
---|---|---|---|---|
0 | \n", "0.080 | \n", "0.373 | \n", "0.157 | \n", "0.391 | \n", "
1 | \n", "0.794 | \n", "0.118 | \n", "0.041 | \n", "0.046 | \n", "
2 | \n", "0.090 | \n", "0.000 | \n", "0.905 | \n", "0.005 | \n", "
3 | \n", "0.961 | \n", "0.026 | \n", "0.008 | \n", "0.005 | \n", "
4 | \n", "0.077 | \n", "0.000 | \n", "0.910 | \n", "0.013 | \n", "